{"id":15954,"date":"2021-10-20T08:00:47","date_gmt":"2021-10-20T08:00:47","guid":{"rendered":"https:\/\/www.cheeridea.mytw.org\/bmi\/%e5%b7%ab%e5%9d%a4%e5%93%81-kun-pin-wu\/"},"modified":"2022-06-29T09:18:56","modified_gmt":"2022-06-29T09:18:56","slug":"kun-pin-wu","status":"publish","type":"post","link":"https:\/\/bmi.nycu.edu.tw\/en\/kun-pin-wu\/","title":{"rendered":"Kun-Pin Wu"},"content":{"rendered":"\n\n\n\n\n\n\n\n
\n

Personal Profile<\/h3>\n<\/td>\n<\/tr>\n

\"\"<\/td>\nKun-Pin Wu<\/strong>
\nProfessor, Institute of Biomedical Informatics
\nPhD of Electronic Engineering, National Taiwan University, Taiwan
\nField of Interest: Algorithms of Bioinformatics, Computatioal Proteomics
\nOffice: R303, 3F, SoRen Building
\nPhone: 886-2-28267273
\nEmail: kpwu@nycu.edu.tw<\/td>\n<\/tr>\n
\n

Research Interests<\/h3>\n<\/td>\n<\/tr>\n

\n
    \n
  • \u7814\u7a76\u4e3b\u984c (Research Topics)\uff1a\n
      \n
    • \u5be6\u8b49\u91ab\u5b78\u7684\u6587\u737b\u56de\u9867 (Systematic Reviews in Evidence-Based Medicine)<\/li>\n
    • \u795e\u7d93\u7d30\u80de\u5206\u7fa4\u3001\u5206\u985e\uff0c\u8207\u6a19\u8a18\u5c0b\u627e (Neuronal Clustering, Classification, and Marker Discovery)<\/li>\n
    • \u764c\u75c7\u6a19\u8a18\u5c0b\u627e (Cancer Marker Discovery)<\/li>\n
    • \u751f\u91ab\u6578\u64da\u5206\u6790 (Biomedical Data Analysis)<\/li>\n<\/ul>\n<\/li>\n
    • \u7814\u7a76\u65b9\u6cd5 (Research Methodology)\uff1a\n
        \n
      • \u4eba\u5de5\u667a\u6167(Artificial Intelligence)<\/li>\n
      • \u8cc7\u6599\u63a2\u52d8 (Data Mining)<\/li>\n
      • \u6578\u64da\u5206\u6790 (Data Analysis)<\/li>\n
      • \u81ea\u7136\u8a9e\u8a00\u8655\u7406 (Natural Language Processing)<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/td>\n<\/tr>\n
\n

Publications<\/h3>\n<\/td>\n<\/tr>\n

\n
    \n
  • Journal Papers<\/strong>\n
      \n
    • S.M. Chaw*, Y.C. Liu, Y.W. Wu, H.Y. Wang, C.Y.I. Lin, C.S. Wu, H.M. Ke, L.Y. Chang, C.Y. Hsu, H.T. Yang, E. Sudianto, M.H. Hsu, K.P. Wu, L.N. Wang, J.H. Leebens-Mack, I.J. Tsai*. Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. Nature Plants, 5(1):63\u201373, 2019.<\/li>\n
    • W.S. Tien, P.M. Chen, C.Y. Chuang, S.M. Lui, H.C. Kuo, Y.J. Chen, K.P. Wu\u2217. Combining membrane proteomics and computational three-way pathway analysis revealed signalling pathways preferentially regulated in human iPSCs and human ESCs.\u00a0Scienti\u20acc Reports<\/em>, 7(1):15055, 2017.<\/li>\n
    • E.Y. Lai, Y.H. Chen, K.P. Wu\u2217. A knowledge-based T2-statistic to perform pathway analysis for quantitative proteomic data.\u00a0PLoS Computational Biology<\/em>, 13(6):e1005601, 2017.<\/li>\n
    • D.C. Wu, K.Y. Wang, S.S.W. Wang, C.M. Huang, Y.W. Lee, M.I. Chen, S.A. Chuang, S.H. Chen, Y.W. Lu, C.C. Lin, K.W. Lee, W.H. Hsu, K.P. Wu\u2217, Y.J. Chen\u2217. Exploring the expression bar code of SAA variants for gastric cancer detection.\u00a0Proteomics<\/em>, 17(11):1600356, 2017.<\/li>\n
    • C.H. Shao, C.L. Chen, J.Y. Lin, C.J. Chen, S.H. Fu, Y.T. Chen, Y.S. Chang, J.S. Yu, K.H. Tsui, C.G. Juo\u2217, K.P. Wu\u2217. Metabolite marker discovery for the detection of bladder cancer by comparative metabolomics.\u00a0Oncotarget<\/em>, 8:38802\u201338810, 2017.<\/li>\n
    • W.S. Tien, J.H. Chen, K.P. Wu\u2217. SheddomeDB: the ectodomain shedding database for membrane-bound shed markers.\u00a0BMC Bioinformatics<\/em>, 18(Suppl 3):42, 2017.<\/li>\n
    • W.H. Hou, N. Kuo, G.W. Fang, H.S. Huang, K.P. Wu, A. Zimmer, J.K. Cheng\u2217, C.C. Lien\u2217. Wiring Speci\u20accity and Synaptic Diversity in the Mouse Lateral Central Amygdala.\u00a0Journal of Neuroscience<\/em>, 36(16):4549\u20134563, 2016.<\/li>\n
    • S.C. Chiang, C.L. Han, K.H. Yu, Y.J. Chen, K.P. Wu\u2217. Prioritization of cancer marker candidates based on the immunohistochemistry staining images deposited in the Human Protein Atlas.\u00a0PLoS ONE<\/em>, 8(11):e81079, 2013.<\/li>\n
    • W.S. Tien, Y.T. Chen, K.P. Wu\u2217. SecretePipe: A screening pipeline for secreted proteins with competence to identify potential membrane-bound shed markers.\u00a0Journal of Proteome Research<\/em>, 12(3):1235\u20131244, 2013.<\/li>\n
    • E.Y. Lai, W.B. Wang, T. Jiang, K.P. Wu\u2217. A linear-time algorithm for reconstructing zero-recombinant haplotype con\u20acguration on a pedigree.\u00a0BMC Bioinformatics<\/em>, 13(Suppl 17):S19, 2012.<\/li>\n
    • M.Y. Day, R.T.H. Tsai, C.L. Sung, C.C. Hsieh, C.W. Lee, S.H. Wu, K.P. Wu, C.S. Ong, W.L. Hsu. Reference Metadata Extraction Using a Hierarchical Knowledge Representation Framework.\u00a0Decision Support Systems<\/em>, 43(1):152\u2013167, 2007.<\/li>\n
    • W.T. Lin, W.N. Hung, Y.H. Yian, K.P. Wu\u2217, C.L. Han, Y.R. Chen, Y.J. Chen, T.Y. Sung\u2217, W.L. Hsu. Multi-Q: A Fully Automated Tool for Multiplexed Protein Quantitation.\u00a0Journal of Proteome Research<\/em>, 5(9):2328\u20132338, 2006.<\/li>\n
    • K.P. Wu, J.M. Chang, J.B. Chen, C.F. Chang, W.J. Wu, T.H. Huang, T.Y. Sung, W.L. Hsu. RIBRA\u2014An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem,\u00a0Journal of Computational Biology<\/em>, 13(2):229\u2013244, 2006.<\/li>\n
    • H.N. Lin, K.P. Wu, J.M. Chang, T.Y. Sung, W.L. Hsu. GANA\u2014A Genetic Algorithm for NMR Backbone Resonance Assignment,\u00a0Nucleic Acids Research<\/em>, 33(14):4593\u20134601, 2005.<\/li>\n
    • H.N. Lin, J.M. Chang, K.P. Wu, T.Y. Sung, W.L. Hsu. HYPROSP II\u2014A Knowledge-based Hybrid Method for Protein Secondary Structure Prediction Based on Local Prediction Confidence,\u00a0Bioinformatics<\/em>, 21(15):3227\u20133233, 2005.<\/li>\n
    • K.P. Wu, H.N. Lin, J.M. Chang, T.Y. Sung, W.L. Hsu. HYPROSP: a Hybrid Protein Secondary Structure Prediction Algorithm\u2014a Knowledge-based Approach,\u00a0Nucleic Acids Research<\/em>, 32(17):5059\u20135065, 2004.<\/li>\n
    • K.P. Wu, S.J. Ruan, C.K. Tseng, F. Lai. Hierarchical Access Control Using the Secure Filter, IEICE Transactions on Information and Systems, E84-D(6):700\u2013708, 2001.<\/li>\n
    • K.P. Wu, Y.J. Joung. Asynchronous Group Mutual Exclusion in Ring Networks, IEE Proceedings-Computers and Digital Techniques, 147(1):1\u20138, 2000.<\/li>\n<\/ul>\n<\/li>\n
    • Conference Papers<\/strong>\n
        \n
      • C.T. Chen, H.N. Lin, K.P. Wu, T.Y. Sung and W.L. Hsu \u201cA Knowledge-based Approach to Protein Local Structure Prediction,\u201d the Fourth Asia Pacific Bioinformatics Conference (APBC 2006), 257-266. Acceptance rate, 30% (35\/118).<\/li>\n
      • K.P. Wu, J.M. Chang, J.B. Chen, C.F. Chang, W.J. Wu, T.H. Huang, T.Y. Sung and W.L. Hsu \u201cRIBRA\u2013An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem,\u201d the Ninth Annual International Conference on Research in Computational Molecular Biology (RECOMB 2005). Lecture Notes in Computer Science 3500, 103-117. Acceptance rate, 18% (39\/217).<\/li>\n
      • Y.F. Lin, T.H. Tsai, W.C. Chou, K.P. Wu, T.Y. Sung and W.L. Hsu \u201cA Maximum Entropy Approach to Biomedical Named Entity Recognition,\u201d Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BioKDD 2004), 56-61.<\/li>\n
      • K.P. Wu, H.N. Lin, T.Y. Sung and W.L. Hsu \u201cA New Similarity Measure among Protein Sequences,\u201d Proceedings of 2nd IEEE Computational Systems Bioinformatics (CSB 2003), 347-352. Acceptance rate, 19% (27\/138)<\/li>\n
      • K.P. Wu, H.N. Lin, T.Y. Sung and W.L. Hsu \u201cAn Efficient Method to Find Protein Sequence Patterns and Its Applications,\u201d Proceedings of the 20th Workshop on Combinatorial Mathematics and Computation Theory, 45-51, 2003.<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

        Personal Profile Kun-Pin Wu Professor, Institute of Biomedical Informatics PhD of Electronic Engineering, National Taiwan University, Taiwan Field of Interest: Algorithms of Bioinformatics, Computatioal Proteomics Office: R303, 3F, SoRen Building Phone: 886-2-28267273 Email: kpwu@nycu.edu.tw Research Interests \u7814\u7a76\u4e3b\u984c (Research Topics)\uff1a \u5be6\u8b49\u91ab\u5b78\u7684\u6587\u737b\u56de\u9867 (Systematic Reviews in Evidence-Based Medicine) \u795e\u7d93\u7d30\u80de\u5206\u7fa4\u3001\u5206\u985e\uff0c\u8207\u6a19\u8a18\u5c0b\u627e (Neuronal Clustering, Classification, and Marker Discovery) \u764c\u75c7\u6a19\u8a18\u5c0b\u627e (Cancer Marker..<\/p>\n","protected":false},"author":1,"featured_media":20653,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[30],"tags":[],"class_list":["post-15954","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category--en"],"yoast_head":"\nKun-Pin Wu - 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