Cho-Yi Chen

Personal Profile

Cho-Yi Chen
Assistant Professor, Institute of Biomedical Informatics
PhD of Joint Degree Program in Genome and Systems Biology, National
Taiwan University (NTU) & Academia Sinica
Field of Interest: Bioinformatics & Computational Biology, Genomics &
Systems Biology, Chronogenomics & Chronobiology
Office: R314, 3F, SoRen Building
Phone: 886-2-28267989

Research Interests

  • 生物資訊與計算生物學 (Bioinformatics & Computational Biology)
  • 基因體與系統生物學 (Genomics & Systems Biology)
  • 時間基因體與時間生物學 (Chronogenomics & Chronobiology)


  • Cho-Yi Chen*, Li Zhu*, Ying Ding*, Lin Wang, Zhiguang Huo, SungHwan Kim, Christos Sotiriou, Steffi Oesterreich, George C Tseng (2017). MetaDCN: meta-analysis framework for differential co-expression network detection with an application in breast cancer. Bioinformatics, 33(8): 1121-1129.
  • Cho-Yi Chen, Ryan W Logan, Tianzhou Ma, David A Lewis, George C Tseng, Etienne Sibille, Colleen A McClung (2016). Effects of aging on circadian patterns of gene expression in the human prefrontal cortex. Proceedings of the National Academy of Sciences, 113(1): 206-11.
  • Cho-Yi Chen, Andy Ho, Hsin-Yuan Huang, Hsueh-Fen Juan, Hsuan-Cheng Huang (2014). Dissecting the human protein-protein interaction network via phylogenetic decomposition. Scientific Reports, 4: 7153.
  • Cho-Yi Chen, Shui-Tein Chen, Hsueh-Fen Juan, Hsuan-Cheng Huang (2012). Lengthening of 3′UTR increases with morphological complexity in animal evolution. Bioinformatics, 28(24): 3178-3181.
  • Chen-Ching Lin*, Ya-Jen Chen*, Cho-Yi Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang (2012). Crosstalk Between Transcription Factors and MicroRNAs in Human Protein Interaction Network. BMC Systems Biology, 6: 18.
  • Cho-Yi Chen, Shui-Tein Chen, Chiou-Shann Fuh, Hsueh-Fen Juan, Hsuan-Cheng Huang (2011). Coregulation of transcription factors and microRNAs in human transcriptional regulatory network. BMC Bioinformatics, 12(Suppl1): S41.